Stem-loop rno-mir-194-1

Accession

MI0000937

Description

Rattus norvegicus rno-mir-194-1 precursor miRNA

Literature search

22 open access papers mention rno-mir-194-1
(130 sentences)

Sequence

2285825 reads, 2685.0 reads per million, 509 experiments

auggagucaucacgUGUAACAGCAACUCCAUGUGGAcugugcacagaucCCAGUGGAGCUGCUGUUACUUUUGauggccucca
.(((((((((((...(((((((((.((((((..((((((....))).)))..)))))).)))))))))...)))))).)))))

Structure

a     -      cgU         A      GU   -   u 
 uggag ucauca   GUAACAGCA CUCCAU  GGA cug g
 ||||| ||||||   ||||||||| ||||||  ||| |||  
 accuc gguaGU   CAUUGUCGU GAGGUG  Ccu gac c
-     c      UUU         C      AC   a   a 

Annotation confidence High

Genome context

chr13: 103250576-103250658 [+]

Mature rno-miR-194-1-5p

• Accession: MIMAT0000869
• Description: Rattus norvegicus rno-miR-194-1-5p mature miRNA
• Sequence: 15 - UGUAACAGCAACUCCAUGUGGA - 36
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-194-1-3p

• Accession: MIMAT0061420
• Description: Rattus norvegicus rno-miR-194-1-3p mature miRNA
• Sequence: 50 - CCAGUGGAGCUGCUGUUACUUUUG - 73
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249