Stem-loop rno-mir-195

Accession

MI0000939

Description

Rattus norvegicus rno-mir-195 precursor miRNA

Literature search

49 open access papers mention rno-mir-195
(241 sentences)

Sequence

322682 reads, 270 reads per million, 483 experiments

aacucuccuggcucUAGCAGCACAGAAAUAUUGGCacggguaagugagucugCCAAUAUUGGCUGUGCUGCUCCAggcaggguggug
.(((.(((((.((..((((((((((.((((((((((.((.(.....).))))))))))))..))))))))))..)).))))).))).

Structure

a   c     g  cU          -A          c  g a 
 acu uccug cu  AGCAGCACAG  AAUAUUGGCa gg u a
 ||| ||||| ||  ||||||||||  |||||||||| || | g
 ugg gggac gA  UCGUCGUGUC  UUAUAACCgu cu a u
g   u     g  CC          GG          -  g g 

Annotation confidence Medium

Genome context

chr10: 56845301-56845387 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-195

Mature rno-miR-195-5p

• Accession: MIMAT0000870
• Description: Rattus norvegicus rno-miR-195-5p mature miRNA
• Sequence: 15 - UAGCAGCACAGAAAUAUUGGC - 35
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-195-3p

• Accession: MIMAT0017149
• Description: Rattus norvegicus rno-miR-195-3p mature miRNA
• Sequence: 53 - CCAAUAUUGGCUGUGCUGCUCCA - 75
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249