Stem-loop rno-mir-205

Accession

MI0000947

Description

Rattus norvegicus rno-mir-205 precursor miRNA

Literature search

165 open access papers mention rno-mir-205
(604 sentences)

Sequence

139270 reads, 150.0 reads per million, 480 experiments

aaacagccccagacaauccauggguccuccugUCCUUCAUUCCACCGGAGUCUGUcuuaugccaaccaGAUUUCAGUGGAGUGAAGCUCAggaggcauggagcugcca
...((((.........((((((...(((((((..(((((((((((.((((((((............)))))))).)))))))))))..)))))))))))))))))...

Structure

aaa    cccagacaa      ggu       UC           C        Ucuua 
   cagc         uccaug   ccuccug  CUUCAUUCCAC GGAGUCUG     u
   ||||         ||||||   |||||||  ||||||||||| ||||||||      
   gucg         agguac   ggaggAC  GAAGUGAGGUG CUUUAGac     g
acc    ---------      ---       UC           A        caacc 

Annotation confidence High

Genome context

chr13: 112233283-112233390 [-]

Mature rno-miR-205-5p

• Accession: MIMAT0000878
• Description: Rattus norvegicus rno-miR-205-5p mature miRNA
• Sequence: 33 - UCCUUCAUUCCACCGGAGUCUGU - 55
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-205-3p

• Accession: MIMAT0061421
• Description: Rattus norvegicus rno-miR-205-3p mature miRNA
• Sequence: 69 - GAUUUCAGUGGAGUGAAGCUCA - 90
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 12554859
   New microRNAs from mouse and human
   "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
   "RNA (2003) 9:175-179


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249