Stem-loop rno-mir-206

Accession

MI0000948

Description

Rattus norvegicus rno-mir-206 precursor miRNA

Literature search

51 open access papers mention rno-mir-206
(241 sentences)

Sequence

97909 reads, 141 reads per million, 224 experiments

cuuccccaggccACAUGCUUCUUUAUAUCCUCAUagauaucacugcgcuaUGGAAUGUAAGGAAGUGUGUGGuuuuggcaagug
(((.((.(((((((((((((((((((((.(.(((((...........)))))).))))))))))))))))))))).)).)))..

Structure

--   c  c                     C U     auau 
  cuu cc aggccACAUGCUUCUUUAUAU C CAUag    c
  ||| || ||||||||||||||||||||| | |||||    a
  gaa gg uuuGGUGUGUGAAGGAAUGUA G GUauc    c
gu   c  u                     A -     gcgu 

Annotation confidence High

Genome context

chr9: 26791764-26791847 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-206

Mature rno-miR-206-5p

• Accession: MIMAT0017154
• Description: Rattus norvegicus rno-miR-206-5p mature miRNA
• Sequence: 13 - ACAUGCUUCUUUAUAUCCUCAU - 34
• Evidence: experimental ; SOLiD [3]

Mature rno-miR-206-3p

• Accession: MIMAT0000879
• Description: Rattus norvegicus rno-miR-206-3p mature miRNA
• Sequence: 51 - UGGAAUGUAAGGAAGUGUGUGG - 72
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249