Stem-loop rno-mir-210

Accession

MI0000950

Description

Rattus norvegicus rno-mir-210 precursor miRNA

Literature search

53 open access papers mention rno-mir-210
(564 sentences)

Sequence

52528 reads, 90 reads per million, 493 experiments

ccggggcagucccuccaggcucaggacAGCCACUGCCCACAGCACACUGcguugcuccggacccaCUGUGCGUGUGACAGCGGCUGAucugucccugggcagcgcgaacc
..(((.....)))((((((..((((.(((((.(((..(((((((((.((.(((......))).)).))))).)))).))).))))).))))..))))))...........

Structure

ccggggcaguccc      cu    a     A   CC    -     C  c   gc 
             uccagg  cagg cAGCC CUG  CACA GCACA UG guu  u
             ||||||  |||| ||||| |||  |||| ||||| || |||   
             gggucc  gucu GUCGG GAC  GUGU CGUGU ac cag  c
--ccaagcgcgac      cu    A     C   -A    G     C  c   gc 

Annotation confidence High

Genome context

chr1: 214208355-214208464 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-210

Mature rno-miR-210-5p

• Accession: MIMAT0017156
• Description: Rattus norvegicus rno-miR-210-5p mature miRNA
• Sequence: 28 - AGCCACUGCCCACAGCACACUG - 49
• Evidence: experimental ; SOLiD [3]

Mature rno-miR-210-3p

• Accession: MIMAT0000881
• Description: Rattus norvegicus rno-miR-210-3p mature miRNA
• Sequence: 66 - CUGUGCGUGUGACAGCGGCUGA - 87
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249