Stem-loop rno-mir-181a-1

Accession

MI0000953

Description

Rattus norvegicus rno-mir-181a-1 precursor miRNA

Literature search

63 open access papers mention rno-mir-181a-1
(297 sentences)

Sequence

36319459 reads, 26578 reads per million, 509 experiments

agguugcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaauucaaauaaaaACCAUCGACCGUUGAUUGUACCcuauagcuaaccauuaucuacucc
.(((((((..((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))..))).))))............

Structure

-----------a    -   uc  u A   U      CU       A    ggaau 
            gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
            |||| |||  || | ||| ||||||  ||||||| ||||     c
            ccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
ccucaucuauua    u   ua  C A   U      --       -    aauaa 

Annotation confidence Medium

Genome context

chr13: 54952742-54952841 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-181a-1

Mature rno-miR-181a-5p

• Accession: MIMAT0000858
• Description: Rattus norvegicus rno-miR-181a-5p mature miRNA
• Sequence: 15 - AACAUUCAACGCUGUCGGUGAGU - 37
• Evidence: experimental ; cloned [3-4], SOLiD [4]

Mature rno-miR-181a-1-3p

• Accession: MIMAT0000884
• Description: Rattus norvegicus rno-miR-181a-1-3p mature miRNA
• Sequence: 55 - ACCAUCGACCGUUGAUUGUACC - 76
• Evidence: experimental ; cloned [1], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68


4. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714