Stem-loop rno-mir-218a-1

Accession

MI0000958

Description

Rattus norvegicus rno-mir-218a-1 precursor miRNA

Literature search

14 open access papers mention rno-mir-218a-1
(43 sentences)

Sequence

311503 reads, 229 reads per million, 480 experiments

gugauaacguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgcuugcgagguaugaguaAAACAUGGUUCCGUCAAGCACcauggaacgucacgcagcuuucuaca
(((..((.((.(((.(((.((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))).))).))).))))..))).

Structure

-   au  c  a   a   u      U         CU        gc    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua CACGAACUG  UUGGUACA  Aaug   a
a   cu  -  a   a   c      c         CC        -A    agu 

Annotation confidence Medium

Genome context

chr14: 66923083-66923192 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-218a-1

Mature rno-miR-218a-5p

• Accession: MIMAT0000888
• Description: Rattus norvegicus rno-miR-218a-5p mature miRNA
• Sequence: 25 - UUGUGCUUGAUCUAACCAUGU - 45
• Evidence: experimental ; cloned [1-3], Northern [1-2], SOLiD [4]

Mature rno-miR-218a-1-3p

• Accession: MIMAT0017162
• Description: Rattus norvegicus rno-miR-218a-1-3p mature miRNA
• Sequence: 64 - AAACAUGGUUCCGUCAAGCAC - 84
• Evidence: experimental ; SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


4. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249