Stem-loop rno-mir-222

Accession

MI0000962

Description

Rattus norvegicus rno-mir-222 precursor miRNA

Literature search

44 open access papers mention rno-mir-222
(252 sentences)

Sequence

318885 reads, 219 reads per million, 491 experiments

aaggauuagggugcccucaguGGCUCAGUAGCCAGUGUAGAUccugucuuugguaaucagcAGCUACAUCUGGCUACUGGGUcucugauggcaucaucuagcu
..((((...((((((.((((.(((((((((((((((((((...(((...........)))...))))).)))))))))))))).)))).))))))))))....

Structure

--aa    uag      c    u              -     AUc   ucuu 
    ggau   ggugcc ucag GGCUCAGUAGCCAG UGUAG   cug    u
    ||||   |||||| |||| |||||||||||||| |||||   |||    g
    ucua   cuacgg aguc cUGGGUCAUCGGUC ACAUC   gac    g
ucga    ---      u    u              U     GAc   uaau 

Annotation confidence Medium

Genome context

chrX: 3683919-3684021 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-222

Mature rno-miR-222-5p

• Accession: MIMAT0017164
• Description: Rattus norvegicus rno-miR-222-5p mature miRNA
• Sequence: 22 - GGCUCAGUAGCCAGUGUAGAU - 42
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-222-3p

• Accession: MIMAT0000891
• Description: Rattus norvegicus rno-miR-222-3p mature miRNA
• Sequence: 62 - AGCUACAUCUGGCUACUGGGU - 82
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249