Stem-loop rno-mir-290

Accession

MI0000964

Description

Rattus norvegicus rno-mir-290 precursor miRNA

Literature search

25 open access papers mention rno-mir-290
(72 sentences)

Sequence

98 reads, 1.0 reads per million, 40 experiments

ucaucuugcgguUCUCAAACUAUGGGGGCACUUUUUuuuucuuuaaAAAGUGCCGCCAGGUUUUAGGGCcugccgguugag
(((.((.((((((((.(((((.(((.((((((((((........)))))))))).)))))))).)))))).)).)).))).

Structure

-   u  u  -      C     A   G          uuu 
 uca cu gc gguUCU AAACU UGG GGCACUUUUU   u
 ||| || || |||||| ||||| ||| ||||||||||    
 agu gg cg cCGGGA UUUGG ACC CCGUGAAAaa   c
g   u  c  u      U     -   G          uuu 

Annotation confidence Medium

Genome context

chr1: 64538705-64538785 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rno-mir-290

Mature rno-miR-290-5p

• Accession: MIMAT0060852
• Description: Rattus norvegicus rno-miR-290-5p mature miRNA
• Sequence: 13 - UCUCAAACUAUGGGGGCACUUUUU - 36
• Evidence: experimental ; Illumina [1]

Mature rno-miR-290-3p

• Accession: MIMAT0000893
• Description: Rattus norvegicus rno-miR-290-3p mature miRNA
• Sequence: 47 - AAAGUGCCGCCAGGUUUUAGGGC - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249