Stem-loop rno-mir-296

Accession

MI0000967

Description

Rattus norvegicus rno-mir-296 precursor miRNA

Literature search

16 open access papers mention rno-mir-296
(45 sentences)

Sequence

3343 reads, 58 reads per million, 259 experiments

ggaccuuucuggAGGGCCCCCCCUCAAUCCUGUugugcucgcuucaGAGGGUUGGGUGGAGGCUCUCCugaagguguc
.((((((((.((((((((.((.(((((((((.(((.........)))))))))))).)).)))))))).))))).)))

Structure

g   -     u        C  C         G   ugc 
 gac cuuuc ggAGGGCC CC CUCAAUCCU Uug   u
 ||| ||||| |||||||| || ||||||||| |||   c
 cug ggaag CCUCUCGG GG GGGUUGGGA Gac   g
-   u     u        A  U         -   uuc 

Annotation confidence High

Genome context

chr3: 172357490-172357567 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-296

Mature rno-miR-296-5p

• Accession: MIMAT0000898
• Description: Rattus norvegicus rno-miR-296-5p mature miRNA
• Sequence: 13 - AGGGCCCCCCCUCAAUCCUGU - 33
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-296-3p

• Accession: MIMAT0004742
• Description: Rattus norvegicus rno-miR-296-3p mature miRNA
• Sequence: 47 - GAGGGUUGGGUGGAGGCUCUCC - 68
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249