Stem-loop rno-mir-298

Accession

MI0000969

Description

Rattus norvegicus rno-mir-298 precursor miRNA

Literature search

13 open access papers mention rno-mir-298
(34 sentences)

Sequence

44391 reads, 53 reads per million, 406 experiments

ccaggccuucGGCAGAGGAGGGCUGUUCUUCCCuuggguuuuaugacugggAGGAACUAGCCUUCUCUCUGCUuaggagugg
(((..(((..(((((((((((((((((((((((...((((....))))))))))))).))))))).))))))).)))..)))

Structure

   gg   uc       -       -         uug    u 
cca  ccu  GGCAGAG GAGGGCU GUUCUUCCC   gguu u
|||  |||  ||||||| ||||||| |||||||||   ||||  
ggu  gga  UCGUCUC CUUCCGA CAAGGAggg   ucag a
   ga   -u       U       U         ---    u 

Annotation confidence High

Genome context

chr3: 172357943-172358024 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-298

Mature rno-miR-298-5p

• Accession: MIMAT0000900
• Description: Rattus norvegicus rno-miR-298-5p mature miRNA
• Sequence: 11 - GGCAGAGGAGGGCUGUUCUUCCC - 33
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-298-3p

• Accession: MIMAT0017166
• Description: Rattus norvegicus rno-miR-298-3p mature miRNA
• Sequence: 52 - AGGAACUAGCCUUCUCUCUGCU - 73
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249