Stem-loop rno-mir-320

Accession

MI0000972

Description

Rattus norvegicus rno-mir-320 precursor miRNA

Literature search

135 open access papers mention rno-mir-320
(432 sentences)

Sequence

321265 reads, 412.0 reads per million, 514 experiments

gccucgcuguccuccGCCUUCUCUUCCCGGUUCUUCCcggagucgggAAAAGCUGGGUUGAGAGGGCGAaaaaggauauggg
..((((.((((((.(((((((((..(((((((.((((((....)))))).)))))))..)))))))))....))))))))))

Structure

gc    c      ---c         UU       C      g 
  cucg uguccu    cGCCUUCUC  CCCGGUU UUCCcg a
  |||| ||||||    |||||||||  ||||||| ||||||  
  gggu auagga    GCGGGAGAG  GGGUCGA AAgggc g
--    -      aaaA         UU       A      u 

Annotation confidence High

Genome context

chr15: 52134276-52134357 [+]

Mature rno-miR-320-5p

• Accession: MIMAT0017168
• Description: Rattus norvegicus rno-miR-320-5p mature miRNA
• Sequence: 16 - GCCUUCUCUUCCCGGUUCUUCC - 37
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-320-3p

• Accession: MIMAT0000903
• Description: Rattus norvegicus rno-miR-320-3p mature miRNA
• Sequence: 48 - AAAAGCUGGGUUGAGAGGGCGA - 69
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249