Stem-loop osa-MIR399a

Accession

MI0001053

Description

Oryza sativa osa-MIR399a precursor miRNA

Literature search

63 open access papers mention osa-MIR399a
(251 sentences)

Sequence

13817 reads, 64.0 reads per million, 136 experiments

cugugaauuacaGGGCAGUUCACCUUUGGCACAagggcaagcaguagaaaccaugcgugcuugcuagagcuggaaaugaugcugguagcauugcaugguucagggaucacagaucucgUGCCAAAGGAGAAUUGCCCUGcgauuuuguc
....(((((.(((((((((((.((((((((((...(((((((((((.......))).)))))))).((((((....(((((((...)))))))..)))))).((((((...)))))))))))))))).))))))))))).)))))....

Structure

cugu     a           A          Aagggcaagcaguagaaaccaugcgugcuugcua      gaaa       g 
    gaauu caGGGCAGUUC CCUUUGGCAC                                  gagcug    ugaugcu  
    ||||| ||||||||||| ||||||||||                                  ||||||    ||||||| g
    uuuag GUCCCGUUAAG GGAAACCGUg                                  cuuggu    guuacga  
cugu     c           A          ------------------cucuagacacuaggga      --ac       u 

Annotation confidence High

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

1: 30478636-30478784 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR399a

Mature osa-miR399a-5p

• Accession: MIMAT0061192
• Description: Oryza sativa osa-miR399a-5p mature miRNA
• Sequence: 13 - GGGCAGUUCACCUUUGGCACA - 33
• Evidence: experimental ; Illumina [1]

Mature osa-miR399a-3p

• Accession: MIMAT0000984
• Description: Oryza sativa osa-miR399a-3p mature miRNA
• Sequence: 119 - UGCCAAAGGAGAAUUGCCCUG - 139
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799