Stem-loop osa-MIR399b

Accession

MI0001054

Description

Oryza sativa osa-MIR399b precursor miRNA

Literature search

60 open access papers mention osa-MIR399b
(235 sentences)

Sequence

14752 reads, 68.0 reads per million, 136 experiments

gugagaaucacaGUGCGAUUCUCCUCUGGCAUGgcaugagaggccuaaaaaagagacgcacugccgUGCCAAAGGAGAAUUGCCCUGccauucagaa
....((((..(((.(((((((((((.((((((((((((.....(........).....)).)))))))))).))))))))))).)))..))))....

Structure

guga    ca   U           C          -  agagg cua 
    gaau  caG GCGAUUCUCCU UGGCAUGgca ug     c   a
    ||||  ||| ||||||||||| |||||||||| ||     |    
    cuua  GUC CGUUAAGAGGA ACCGUgccgu ac     g   a
aaga    cc   C           A          c  gcaga aaa 

Annotation confidence High

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

2: 7664026-7664122 [-]

Mature osa-miR399b-5p

• Accession: MIMAT0055935
• Description: Oryza sativa osa-miR399b-5p mature miRNA
• Sequence: 13 - GUGCGAUUCUCCUCUGGCAUG - 33
• Evidence: experimental ; unknown

Mature osa-miR399b-3p

• Accession: MIMAT0000985
• Description: Oryza sativa osa-miR399b-3p mature miRNA
• Sequence: 67 - UGCCAAAGGAGAAUUGCCCUG - 87
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799