Stem-loop osa-MIR399c

Accession

MI0001055

Description

Oryza sativa osa-MIR399c precursor miRNA

Literature search

58 open access papers mention osa-MIR399c
(231 sentences)

Sequence

15634 reads, 76.0 reads per million, 134 experiments

cggcgaauuacaGGGCGGUUUCUCCUUUGGCACGuacggaggcaaggcaugcggugaaaaaucucuagcuagccaugcgUGCCAAAGGAGAAUUGCCCUGcgauucacca
.((.(((((.((((((((((.(((((((((((((((....(((..(((..(.(((.....))).)..))).))).))))))))))))))))))))))))).))))).)).

Structure

c  c     a          U               cgga   aa   au c   g 
 gg gaauu caGGGCGGUU CUCCUUUGGCACGua    ggc  ggc  g ggu a
 || ||||| |||||||||| |||||||||||||||    |||  |||  | ||| a
 cc cuuag GUCCCGUUAA GAGGAAACCGUgcgu    ccg  ucg  c cua a
a  a     c          -               ---a   -a   au u   a 

Annotation confidence High

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

5: 26305938-26306047 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR399c

Mature osa-miR399c-5p

• Accession: MIMAT0055936
• Description: Oryza sativa osa-miR399c-5p mature miRNA
• Sequence: 13 - GGGCGGUUUCUCCUUUGGCACG - 34
• Evidence: experimental ; unknown

Mature osa-miR399c-3p

• Accession: MIMAT0000986
• Description: Oryza sativa osa-miR399c-3p mature miRNA
• Sequence: 80 - UGCCAAAGGAGAAUUGCCCUG - 100
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799