miRBase entry: osa-MIR399d

Stem-loop osa-MIR399d

Accession

MI0001056

Description

Oryza sativa osa-MIR399d precursor miRNA

Literature search

61 open access papers mention osa-MIR399d
(242 sentences)

Sequence

469725 reads, 2074.0 reads per million, 142 experiments

aagacaguaguaGGCAGCUCUCCUCUGGCAGGugcauucuaggugauuuuguaauuguauaugcauccaagguauauacaguccggccauggugcuacauugcaaucauccauaugugauugcauuguguauauauauacaugguggccuuugauagaccaucauauaucgguugguuaugugcauguauguauauaccagcugcuacuagcuuugaucgaucgccauguagcgauugaauucaccaaaacggccUGCCAAAGGAGAGUUGCCCUGcgacugucuu
((((((((.(((((((((((((((.((((((((........(((((.......(((((((((((.......)))))))))))..(((......)))(((.(((((((((......))))))))).)))(((((((((((((((((((((.((((((..........))))))..))))))...))))))))))))))).(((((....)))))....((((((((......))))))))..)))))......)))))))).)))))))))).))))).))))))))

Structure

        a     -          C        gcauucua     uuuuguaauuguauaugcauccaagguauauacaguccggccauggugcuacauugcaaucauccauaugugauugcauugu               ---      -u      gacc 
aagacagu guaGG CAGCUCUCCU UGGCAGGu        gguga                                                                                  guauauauauacaug   guggcc  uugaua    a
|||||||| ||||| |||||||||| ||||||||        |||||                                                                                  |||||||||||||||   ||||||  ||||||     
uucuguca cGUCC GUUGAGAGGA ACCGUccg        ccacu                                                                                  cauauauguauguac   uauugg  ggcuau    u
        g     C          A        --gcaaaa     ---------------------------------------uaaguuagcgauguaccgcuagcuaguuucgaucaucgucgac               gug      uu      auac

Annotation confidence High

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Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

6: 1561789-1562074 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR399d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature osa-miR399d-5p

Accession	MIMAT0055937
Description	Oryza sativa osa-miR399d-5p mature miRNA
Sequence	13 - GGCAGCUCUCCUCUGGCAGG - 32
Evidence	experimental unknown

Mature osa-miR399d-3p

Accession	MIMAT0000987
Description	Oryza sativa osa-miR399d-3p mature miRNA
Sequence	256 - UGCCAAAGGAGAGUUGCCCUG - 276
Evidence	not_experimental
Database links

References

PubMed ID: 15200956
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
"Jones-Rhoades MW, Bartel DP"
"Mol Cell (2004) 14:787-799