Accession
MI0001056
Description
Oryza sativa
osa-MIR399d precursor miRNA
Literature search
60 open access papers mention osa-MIR399d
(236 sentences)
(236 sentences)
Sequence
12
reads,
8
reads per million, 2 experiments
aagacaguaguaggcagcucuccucuggcaggugcauucuaggugauuuuguaauuguauaugcauccaagguauauacaguccggccauggugcuacauugcaaucauccauaugugauugcauuguguauauauauacaugguggccuuugauagaccaucauauaucgguugguuaugugcauguauguauauaccagcugcuacuagcuuugaucgaucgccauguagcgauugaauucaccaaaacggccUGCCAAAGGAGAGUUGCCCUGcgacugucuu
((((((((.(((((((((((((((.((((((((........(((((.......(((((((((((.......)))))))))))..(((......)))(((.(((((((((......))))))))).)))(((((((((((((((((((((.((((((..........))))))..))))))...))))))))))))))).(((((....)))))....((((((((......))))))))..)))))......)))))))).)))))))))).))))).))))))))
((((((((.(((((((((((((((.((((((((........(((((.......(((((((((((.......)))))))))))..(((......)))(((.(((((((((......))))))))).)))(((((((((((((((((((((.((((((..........))))))..))))))...))))))))))))))).(((((....)))))....((((((((......))))))))..)))))......)))))))).)))))))))).))))).))))))))
Structure
a - c gcauucua uuuuguaauuguauaugcauccaagguauauacaguccggccauggugcuacauugcaaucauccauaugugauugcauugu --- -u gacc
aagacagu guagg cagcucuccu uggcaggu gguga guauauauauacaug guggcc uugaua a
|||||||| ||||| |||||||||| |||||||| ||||| ||||||||||||||| |||||| ||||||
uucuguca cGUCC GUUGAGAGGA ACCGUccg ccacu cauauauguauguac uauugg ggcuau u
g C A --gcaaaa ---------------------------------------uaaguuagcgauguaccgcuagcuaguuucgaucaucgucgac gug uu auac
Annotation confidence
Low
Do you think this miRNA is real?
Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].
Genome context
Chr6: 1561789-1562074 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR399d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR399d
| Accession | MIMAT0000987 |
| Description | Oryza sativa osa-miR399d mature miRNA |
| Sequence | 256 - UGCCAAAGGAGAGUUGCCCUG - 276 |
| Evidence | not_experimental |
| Database links |
|
References
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