Stem-loop osa-MIR399e

Accession

MI0001057

Description

Oryza sativa osa-MIR399e precursor miRNA

Literature search

58 open access papers mention osa-MIR399e
(231 sentences)

Sequence

829 reads, 6.0 reads per million, 83 experiments

acaugcauuaccGGGUGAGUCUUCCUUGGCAGUguucgaaucggcaguaccggucugcaagugaucggucaaucaccaguucaccgcUGCCAAAGGAGAUUUGCCCAGcaaugcaacu
...((((((.(.((((((((((((.(((((((((...((((.((..(((((((((.......)))))))..))..)).))))..))))))))).)))))))))))).).))))))...

Structure

aca      a c            C         uuc    c  ca  --       ug 
   ugcauu c GGGUGAGUCUUC UUGGCAGUg   gaau gg  gu  accgguc  c
   |||||| | |||||||||||| |||||||||   |||| ||  ||  |||||||  a
   acguaa G CCCGUUUAGAGG AACCGUcgc   cuug cc  ua  uggcuag  a
uca      c A            A         -ca    a  ac  ac       ug 

Annotation confidence High

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

1: 30477612-30477729 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR399e

Mature osa-miR399e-5p

• Accession: MIMAT0055938
• Description: Oryza sativa osa-miR399e-5p mature miRNA
• Sequence: 13 - GGGUGAGUCUUCCUUGGCAGU - 33
• Evidence: experimental ; unknown

Mature osa-miR399e-3p

• Accession: MIMAT0000988
• Description: Oryza sativa osa-miR399e-3p mature miRNA
• Sequence: 88 - UGCCAAAGGAGAUUUGCCCAG - 108
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799