miRBase entry: osa-MIR399e

Stem-loop osa-MIR399e


Accession
MI0001057
Description
Oryza sativa osa-MIR399e precursor miRNA

Literature search
58 open access papers mention osa-MIR399e
(229 sentences)

Sequence

acaugcauuaccgggugagucuuccuuggcaguguucgaaucggcaguaccggucugcaagugaucggucaaucaccaguucaccgcUGCCAAAGGAGAUUUGCCCAGcaaugcaacu
...((((((.(.((((((((((((.(((((((((...((((.((..(((((((((.......)))))))..))..)).))))..))))))))).)))))))))))).).))))))...

Structure
aca      a c            c         uuc    c  ca  --       ug 
   ugcauu c gggugagucuuc uuggcagug   gaau gg  gu  accgguc  c
   |||||| | |||||||||||| |||||||||   |||| ||  ||  |||||||  a
   acguaa G CCCGUUUAGAGG AACCGUcgc   cuug cc  ua  uggcuag  a
uca      c A            A         -ca    a  ac  ac       ug 


Annotation confidence Not enough data
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Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context
Chr1: 30477612-30477729 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR399e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR399e

Accession MIMAT0000988
Description Oryza sativa osa-miR399e mature miRNA
Sequence 88 - UGCCAAAGGAGAUUUGCCCAG - 108
Evidence not_experimental

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799