Stem-loop osa-MIR399g

Accession

MI0001059

Description

Oryza sativa osa-MIR399g precursor miRNA

Literature search

58 open access papers mention osa-MIR399g
(230 sentences)

Sequence

760 reads, 6.0 reads per million, 77 experiments

augugcauugcaGGGCAACUACUCCAUUGGCAGAgggauggauuggauauggauauggcugaugcuuccauuugaucccaucccuaucUGCCAAAGGAGAUUUGCCCAGCgauucacuc
..(((.(((((.((((((.(.((((.(((((((((((((((..(.((.(((((...(((....)))))))))).)..)))))))..)))))))).))))).)))))).))))).)))..

Structure

au   c     a      C A    A        --       au g  u     uau   u 
  gug auugc GGGCAA U CUCC UUGGCAGA  gggaugg  u ga augga   ggc g
  ||| ||||| |||||| | |||| ||||||||  |||||||  | || |||||   |||  
  cac uagCG CCCGUU A GAGG AACCGUcu  cccuacc  a uu uaccu   ucg a
cu   u     A      U -    A        au       cu g  -     ---   u 

Annotation confidence High

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

2: 7675284-7675402 [+]

Mature osa-miR399g-5p

• Accession: MIMAT0061194
• Description: Oryza sativa osa-miR399g-5p mature miRNA
• Sequence: 13 - GGGCAACUACUCCAUUGGCAGA - 34
• Evidence: experimental ; Illumina [1]

Mature osa-miR399g-3p

• Accession: MIMAT0000990
• Description: Oryza sativa osa-miR399g-3p mature miRNA
• Sequence: 89 - UGCCAAAGGAGAUUUGCCCAGC - 110
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799