Stem-loop osa-MIR399h

Accession

MI0001060

Description

Oryza sativa osa-MIR399h precursor miRNA

Literature search

60 open access papers mention osa-MIR399h
(230 sentences)

Sequence

726 reads, 6.0 reads per million, 76 experiments

ccaugcauuacuGGGCAGGUCUCCCUUGGCAGUggccgaucgagcugaucaaaccacgcaaaagccacUGCCAAAGGAGACUUGCCCAGcaaugcagau
...((((((.((((((((((((((.(((((((((((.((((.....)))).............))))))))))).)))))))))))))).))))))...

Structure

cca      a              C           ------------c    g 
   ugcauu cuGGGCAGGUCUCC UUGGCAGUggc             gauc a
   |||||| |||||||||||||| |||||||||||             |||| g
   acguaa GACCCGUUCAGAGG AACCGUcaccg             cuag c
uag      c              A           aaaacgcaccaaa    u 

Annotation confidence High

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

5: 26307936-26308034 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR399h

Mature osa-miR399h-5p

• Accession: MIMAT0055940
• Description: Oryza sativa osa-miR399h-5p mature miRNA
• Sequence: 13 - GGGCAGGUCUCCCUUGGCAGU - 33
• Evidence: experimental ; unknown

Mature osa-miR399h-3p

• Accession: MIMAT0000991
• Description: Oryza sativa osa-miR399h-3p mature miRNA
• Sequence: 69 - UGCCAAAGGAGACUUGCCCAG - 89
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799