miRBase entry: osa-MIR399i

Stem-loop osa-MIR399i


Accession
MI0001061
Description
Oryza sativa osa-MIR399i precursor miRNA

Literature search
60 open access papers mention osa-MIR399i
(227 sentences)

Sequence

2 reads, 0 reads per million, 1 experiments
gugagaaucacagugcaguucuccucuggcauggagggcaagaggagcugaauagcuaauggaugauaaacugcuagccuuucccUGCCAAAGGAGAGCUGCCCUGccauucagug
....((((..(((.(((((((((((.(((((.(((((((.((.((((((....)))).............)).)).))).)))).))))).))))))))))).)))..))))....

Structure
guga    ca   u           c     u    -   a  a  -------------    g 
    gaau  cag gcaguucuccu uggca ggag ggc ag gg             agcu a
    ||||  ||| ||||||||||| ||||| |||| ||| || ||             ||||  
    cuua  GUC CGUCGAGAGGA ACCGU ccuu ccg uc uc             ucga a
guga    cc   C           A     c    u   a  g  aaauaguagguaa    u 


Annotation confidence Not enough data
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Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context
Chr2: 7650684-7650799 [+]

Database links

Mature osa-miR399i

Accession MIMAT0000992
Description Oryza sativa osa-miR399i mature miRNA
Sequence 86 - UGCCAAAGGAGAGCUGCCCUG - 106
Evidence not_experimental

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799