Stem-loop osa-MIR399i

Accession

MI0001061

Description

Oryza sativa osa-MIR399i precursor miRNA

Literature search

60 open access papers mention osa-MIR399i
(230 sentences)

Sequence

12984 reads, 74.0 reads per million, 98 experiments

gugagaaucacaGUGCAGUUCUCCUCUGGCAUGgagggcaagaggagcugaauagcuaauggaugauaaacugcuagccuuucccUGCCAAAGGAGAGCUGCCCUGccauucagug
....((((..(((.(((((((((((.(((((.(((((((.((.((((((....)))).............)).)).))).)))).))))).))))))))))).)))..))))....

Structure

guga    ca   U           C     U    -   a  a  -------------    g 
    gaau  caG GCAGUUCUCCU UGGCA Ggag ggc ag gg             agcu a
    ||||  ||| ||||||||||| ||||| |||| ||| || ||             ||||  
    cuua  GUC CGUCGAGAGGA ACCGU ccuu ccg uc uc             ucga a
guga    cc   C           A     c    u   a  g  aaauaguagguaa    u 

Annotation confidence High

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

2: 7650684-7650799 [+]

Mature osa-miR399i-5p

• Accession: MIMAT0055941
• Description: Oryza sativa osa-miR399i-5p mature miRNA
• Sequence: 13 - GUGCAGUUCUCCUCUGGCAUG - 33
• Evidence: experimental ; unknown

Mature osa-miR399i-3p

• Accession: MIMAT0000992
• Description: Oryza sativa osa-miR399i-3p mature miRNA
• Sequence: 86 - UGCCAAAGGAGAGCUGCCCUG - 106
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799