Stem-loop osa-MIR399j

Accession

MI0001062

Description

Oryza sativa osa-MIR399j precursor miRNA

Literature search

62 open access papers mention osa-MIR399j
(234 sentences)

Sequence

223963 reads, 1070.0 reads per million, 142 experiments

aguccaguuucAGGGCUCCUCUCUCUUGGCAGggagcaugugaagucuuuuguagcucacucauuuucagcccucUGCCAAAGGAGAGUUGCCCUAaaacuggacu
((((((((((.(((((..((((((.(((((((((.((..((((.((........)))))).........)).))))))))).))))))..))))).))))))))))

Structure

          c     UC      C         a  -------au    a  cuu 
aguccaguuu AGGGC  CUCUCU UUGGCAGgg gc         guga gu   u
|||||||||| |||||  |||||| ||||||||| ||         |||| ||    
ucaggucaaa UCCCG  GAGAGG AACCGUcuc cg         cacu cg   u
          A     UU      A         c  acuuuuacu    -  aug 

Annotation confidence High

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

4: 28873121-28873226 [+]

Mature osa-miR399j-5p

• Accession: MIMAT0055942
• Description: Oryza sativa osa-miR399j-5p mature miRNA
• Sequence: 12 - AGGGCUCCUCUCUCUUGGCAG - 32
• Evidence: experimental ; unknown

Mature osa-miR399j-3p

• Accession: MIMAT0000993
• Description: Oryza sativa osa-miR399j-3p mature miRNA
• Sequence: 76 - UGCCAAAGGAGAGUUGCCCUA - 96
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799