miRBase entry: osa-MIR399k

Stem-loop osa-MIR399k


Accession
MI0001063
Description
Oryza sativa osa-MIR399k precursor miRNA

Literature search
58 open access papers mention osa-MIR399k
(223 sentences)

Sequence


agcugcauugcugggcaaguuguccuuuggcagauguugcaguucaucaucgaugccuggggguuaccagacuacUGCCAAAGGAAAUUUGCCCCGgaauucaucu
((.((.(((.(.(((((((((.(((((((((((.....(((..((......)))))((((......))))....)))))))))))))))))))).).))).)).))

Structure
  c  c   g u         g           auguugcaguucaucaucgaugc    gg 
ag ug auu c gggcaaguu uccuuuggcag                       cugg  g
|| || ||| | ||||||||| |||||||||||                       ||||   
uc ac uaa G CCCGUUUAA AGGAAACCGUc                       gacc  u
  u  u   g C         -           -------------------auca    au 


Annotation confidence Low
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Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context
Chr5: 26311253-26311358 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from osa-MIR399k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR399k

Accession MIMAT0000994
Description Oryza sativa osa-miR399k mature miRNA
Sequence 76 - UGCCAAAGGAAAUUUGCCCCG - 96
Evidence not_experimental

References

  1. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799