Stem-loop osa-MIR399k

Accession

MI0001063

Description

Oryza sativa osa-MIR399k precursor miRNA

Literature search

58 open access papers mention osa-MIR399k
(226 sentences)

Sequence

1736 reads, 20.0 reads per million, 71 experiments

agcugcauugcuGGGCAAGUUGUCCUUUGGCAGAuguugcaguucaucaucgaugccuggggguuaccagacuacUGCCAAAGGAAAUUUGCCCCGgaauucaucu
((.((.(((.(.(((((((((.(((((((((((.....(((..((......)))))((((......))))....)))))))))))))))))))).).))).)).))

Structure

  c  c   g u         G           Auguugcaguucaucaucgaugc    gg 
ag ug auu c GGGCAAGUU UCCUUUGGCAG                       cugg  g
|| || ||| | ||||||||| |||||||||||                       ||||   
uc ac uaa G CCCGUUUAA AGGAAACCGUc                       gacc  u
  u  u   g C         -           -------------------auca    au 

Annotation confidence High

Comments

This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context

5: 26311253-26311358 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from osa-MIR399k

Mature osa-miR399k-5p

• Accession: MIMAT0055943
• Description: Oryza sativa osa-miR399k-5p mature miRNA
• Sequence: 13 - GGGCAAGUUGUCCUUUGGCAGA - 34
• Evidence: experimental ; unknown

Mature osa-miR399k-3p

• Accession: MIMAT0000994
• Description: Oryza sativa osa-miR399k-3p mature miRNA
• Sequence: 76 - UGCCAAAGGAAAUUUGCCCCG - 96
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799