Accession
MI0001065
Description
Epstein Barr virus
ebv-mir-BHRF1-2 precursor miRNA
Sequence
cuuuuAAAUUCUGUUGCAGCAGAUAGCugauacccaauguUAUCUUUUGCGGCAGAAAUUGAaag
(((((((.(((((((((((.(((((((...........))))))).))))))))))).)))))))
(((((((.(((((((((((.(((((((...........))))))).))))))))))).)))))))
Structure
A C ugau
cuuuuAA UUCUGUUGCAG AGAUAGC a
||||||| ||||||||||| ||||||| c
gaaAGUU AAGACGGCGUU UCUAUug c
A U uaac
Annotation confidence
Low
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Comments
Pfeffer et al. cloned 5 miRNAs from a Burkitt's lymphoma cell line (BL41) infected with the B95-8 strain of Epstein-Barr virus [1]. They were all confirmed by Northern blot. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
HHV507799: 42848-42912 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ebv-mir-BHRF1-2
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Disease association
ebv-mir-BHRF1-2 is associated with one or more human diseases in the Human microRNA Disease Database
| Disease | Description | Category | PubMed ID |
|---|
Database links
Mature ebv-miR-BHRF1-2-5p
| Accession | MIMAT0000996 |
| Description | Epstein Barr virus ebv-miR-BHRF1-2-5p mature miRNA |
| Sequence | 6 - AAAUUCUGUUGCAGCAGAUAGC - 27 |
| Evidence |
experimental
cloned [1-2], Northern [1] |
Mature ebv-miR-BHRF1-2-3p
| Accession | MIMAT0000997 |
| Description | Epstein Barr virus ebv-miR-BHRF1-2-3p mature miRNA |
| Sequence | 41 - UAUCUUUUGCGGCAGAAAUUGA - 62 |
| Evidence |
experimental
cloned [1-2], Northern [1] |
References
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