Dead hairpin entry

Stem-loop ath-MIR401

Accession

MI0001070

Description

Arabidopsis thaliana ath-MIR401 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

5 open access papers mention ath-MIR401
(6 sentences)

Sequence

26461 reads, 290.0 reads per million, 182 experiments

uauauagacccuaaaaacguccagggacuaauaaugcaaauauggaaaucuucuggggcaaacuugagcuucugaaaacuugaaagcguuuaggguuuuugcugggcCGAAACUGGUGUCGACCGACAccaagagugugucgcucgacacucaucgcugauuccugaaccaaaaucguucuuaguuuccuuuuccuuaguuuuugcuccaaaaugucuccuuAUCUCCAUUGUUGUCCCAuugcauagaa
......(((.........)))..(((((.(((((((...(((.(((.((.((.(((((((((.(((((.....(.(((((.((.((((.((..(((((....(.(((.((....((((((((.(((((((....).)))))).))))))))..))))).).....)))))..)).)))).))))))).).....)))))..))))))))).)).)).))).)))...))))))))))))...........

Structure

uauauagacccuaaaaacgucca     u       caa   u   a  c  c         -c     cuucu a     u  a    u  ag     -uugc g   C  AACU        C      - a 
                       gggac aauaaug   aua gga au uu uggggcaaa  uugag     g aaacu ga agcg uu  gguuu     u ggc GA    GGUGUCGA CGACAc c a
                       ||||| |||||||   ||| ||| || || |||||||||  |||||     | ||||| || |||| ||  |||||     | ||| ||    |||||||| |||||| |  
                       CCCUG UUGUUAC   UAu ccu ug aa accucguuu  gauuc     c uuuga uu uugc aa  ccaag     a ucg cu    ucacagcu gcugug g g
------------aagauacguuA     -       CUC   u   c  u  a         uu     cuuuu c     -  c    u  aa     uccuu g   -  --ac        c      u a