Stem-loop ath-MIR401

Accession

MI0001070

Description

Arabidopsis thaliana ath-MIR401 precursor miRNA

Literature search

3 open access papers mention ath-MIR401
(3 sentences)

Sequence

uauauagacccuaaaaacguccagggacuaauaaugcaaauauggaaaucuucuggggcaaacuugagcuucugaaaacuugaaagcguuuaggguuuuugcugggcCGAAACUGGUGUCGACCGACAccaagagugugucgcucgacacucaucgcugauuccugaaccaaaaucguucuuaguuuccuuuuccuuaguuuuugcuccaaaaugucuccuuaucuccauuguugucccauugcauagaa
......(((.........)))..(((((.(((((((...(((.(((.((.((.(((((((((.(((((.....(.(((((.((.((((.((..(((((....(.(((.((....((((((((.(((((((....).)))))).))))))))..))))).).....)))))..)).)))).))))))).).....)))))..))))))))).)).)).))).)))...))))))))))))...........

Structure

uauauagacccuaaaaacgucca     u       caa   u   a  c  c         -c     cuucu a     u  a    u  ag     -uugc g   C  AACU        C      - a 
                       gggac aauaaug   aua gga au uu uggggcaaa  uugag     g aaacu ga agcg uu  gguuu     u ggc GA    GGUGUCGA CGACAc c a
                       ||||| |||||||   ||| ||| || || |||||||||  |||||     | ||||| || |||| ||  |||||     | ||| ||    |||||||| |||||| |  
                       cccug uuguuac   uau ccu ug aa accucguuu  gauuc     c uuuga uu uugc aa  ccaag     a ucg cu    ucacagcu gcugug g g
------------aagauacguua     -       cuc   u   c  u  a         uu     cuuuu c     -  c    u  aa     uccuu g   -  --ac        c      u a 

Annotation confidence Not enough data

Genome context

chr4: 5020237-5020486 [-]

Mature ath-miR401

• Accession: MIMAT0001002
• Description: Arabidopsis thaliana ath-miR401 mature miRNA
• Sequence: 108 - CGAAACUGGUGUCGACCGACA - 128
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019