Stem-loop ath-MIR404

Accession

MI0001073

Description

Arabidopsis thaliana ath-MIR404 precursor miRNA

Sequence

3880 reads, 36.0 reads per million, 170 experiments

uagcauguucguuucAUUAACGCUGGCGGUUGCGGCAGCggcugcgguagcgguggcggcaaacacuaccgcagguuguuguucguuuuguugccgcagacgcugccgcagccgcugccgcAACCGCAGGUUUCUUUGUUCGUUucgacg
.....................(((.(((((((((((((((((((((((((((...(((((((.((..((.((((....))))..))..)))))))))...))))))))))))))))))))))))))).)))...................

Structure

uagcauguucguuucAUUAAC   G                           gug       a  cu  -c    g 
                     GCU GCGGUUGCGGCAGCggcugcgguagcg   gcggcaa ca  ac  gcag u
                     ||| |||||||||||||||||||||||||||   ||||||| ||  ||  ||||  
                     UGG CGCCAAcgccgucgccgacgccgucgc   cgccguu gu  ug  uguu u
--gcagcuUUGCUUGUUUCUU   A                           aga       -  uu  cu    g 

Annotation confidence Low

Genome context

chr1: 11230463-11230612 [-]

Mature ath-miR404-5p

• Accession: MIMAT0001005
• Description: Arabidopsis thaliana ath-miR404-5p mature miRNA
• Sequence: 16 - AUUAACGCUGGCGGUUGCGGCAGC - 39
• Evidence: experimental ; cloned [1], Illumina [2]

Mature ath-miR404-3p

• Accession: MIMAT0053836
• Description: Arabidopsis thaliana ath-miR404-3p mature miRNA
• Sequence: 122 - AACCGCAGGUUUCUUUGUUCGUU - 144
• Evidence: experimental ; unknown

References

1. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


2. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019