miRBase entry: ath-MIR404

Dead hairpin entry

Stem-loop ath-MIR404


Accession
MI0001073
Description
Arabidopsis thaliana ath-MIR404 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

3880 reads, 36.0 reads per million, 170 experiments
uagcauguucguuucAUUAACGCUGGCGGUUGCGGCAGCggcugcgguagcgguggcggcaaacacuaccgcagguuguuguucguuuuguugccgcagacgcugccgcagccgcugccgcAACCGCAGGUUUCUUUGUUCGUUucgacg
.....................(((.(((((((((((((((((((((((((((...(((((((.((..((.((((....))))..))..)))))))))...))))))))))))))))))))))))))).)))...................

Structure
uagcauguucguuucAUUAAC   G                           gug       a  cu  -c    g 
                     GCU GCGGUUGCGGCAGCggcugcgguagcg   gcggcaa ca  ac  gcag u
                     ||| |||||||||||||||||||||||||||   ||||||| ||  ||  ||||  
                     UGG CGCCAAcgccgucgccgacgccgucgc   cgccguu gu  ug  uguu u
--gcagcuUUGCUUGUUUCUU   A                           aga       -  uu  cu    g