Stem-loop ath-MIR405a

Accession

MI0001074

Description

Arabidopsis thaliana ath-MIR405a precursor miRNA

Literature search

1 open access papers mention ath-MIR405a
(1 sentences)

Sequence

33825 reads, 204.0 reads per million, 184 experiments

ucaaaauggguaacccaacccaacccaacucauaaucaaaugaguuuaugauuAAAUGAGUUAUGGGUUGAcccaacucauuuuguuaaaugaguugggucuaacccauaacucauuucauuuGAUGGGUUGAGUUGUUAAAUGGGUuaaccauuua
...((((((.(((((((...((((.(((((((...((((((((...........(((((((((((((((((((((((((((((....)))))))))))))).)))))))))))))))))))))))))))))).)))).....))))))).)))))).

Structure

uca      g       --acc    c       uaa        guuuaugauuA               -              u 
   aaaugg uaaccca     caac caacuca   ucaaauga           AAUGAGUUAUGGGUU GAcccaacucauuu g
   |||||| |||||||     |||| |||||||   ||||||||           ||||||||||||||| ||||||||||||||  
   uuuacc auUGGGU     GUUG GUUGGGU   AGuuuacu           uuacucaauacccaa cuggguugaguaaa u
--a      a       AAAUU    A       ---        -----------               u              u 

Annotation confidence Low

Genome context

chr2: 9634957-9635113 [-]

Mature ath-miR405a-5p

• Accession: MIMAT0053837
• Description: Arabidopsis thaliana ath-miR405a-5p mature miRNA
• Sequence: 54 - AAAUGAGUUAUGGGUUGA - 71
• Evidence: experimental ; unknown

Mature ath-miR405a-3p

• Accession: MIMAT0001006
• Description: Arabidopsis thaliana ath-miR405a-3p mature miRNA
• Sequence: 124 - GAUGGGUUGAGUUGUUAAAUGGGU - 147
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019