Dead hairpin entry

Stem-loop ath-MIR405a

Accession

MI0001074

Description

Arabidopsis thaliana ath-MIR405a precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention ath-MIR405a
(1 sentences)

Sequence

33825 reads, 204.0 reads per million, 184 experiments

ucaaaauggguaacccaacccaacccaacucauaaucaaaugaguuuaugauuAAAUGAGUUAUGGGUUGAcccaacucauuuuguuaaaugaguugggucuaacccauaacucauuucauuuGAUGGGUUGAGUUGUUAAAUGGGUuaaccauuua
...((((((.(((((((...((((.(((((((...((((((((...........(((((((((((((((((((((((((((((....)))))))))))))).)))))))))))))))))))))))))))))).)))).....))))))).)))))).

Structure

uca      g       --acc    c       uaa        guuuaugauuA               -              u 
   aaaugg uaaccca     caac caacuca   ucaaauga           AAUGAGUUAUGGGUU GAcccaacucauuu g
   |||||| |||||||     |||| |||||||   ||||||||           ||||||||||||||| ||||||||||||||  
   uuuacc auUGGGU     GUUG GUUGGGU   AGuuuacu           uuacucaauacccaa cuggguugaguaaa u
--a      a       AAAUU    A       ---        -----------               u              u