Stem-loop ath-MIR405a

Accession

MI0001074

Description

Arabidopsis thaliana ath-MIR405a precursor miRNA

Literature search

1 open access papers mention ath-MIR405a
(1 sentences)

Sequence

ucaaaauggguaacccaacccaacccaacucauaaucaaaugaguuuaugauuaaaugaguuauggguugacccaacucauuuuguuaaAUGAGUUGGGUCUAACCCAUAACUcauuucauuugauggguugaguuguuaaauggguuaaccauuua
...((((((.(((((((...((((.(((((((...((((((((...........(((((((((((((((((((((((((((((....)))))))))))))).)))))))))))))))))))))))))))))).)))).....))))))).)))))).

Structure

uca      g       --acc    c       uaa        guuuaugauua               -              u 
   aaaugg uaaccca     caac caacuca   ucaaauga           aaugaguuauggguu gacccaacucauuu g
   |||||| |||||||     |||| |||||||   ||||||||           ||||||||||||||| ||||||||||||||  
   uuuacc auugggu     guug guugggu   aguuuacu           uuacUCAAUACCCAA CUGGGUUGAGUAaa u
--a      a       aaauu    a       ---        -----------               U              u 

Annotation confidence Not enough data

Genome context

chr2: 9634957-9635113 [-]

Mature ath-miR405a

• Accession: MIMAT0001006
• Description: Arabidopsis thaliana ath-miR405a mature miRNA
• Sequence: 90 - AUGAGUUGGGUCUAACCCAUAACU - 113
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019