Stem-loop ath-MIR405b

Accession

MI0001075

Description

Arabidopsis thaliana ath-MIR405b precursor miRNA

Literature search

1 open access papers mention ath-MIR405b
(1 sentences)

Sequence

12408 reads, 105.0 reads per million, 184 experiments

uuaacccauuuaacaauucaacccaucaaaugaaaugaguuauggguuagacccaacucAUUUAACAAAAUGAGUUGGGUCUAACCCAUAACUcauuuaauuauaaacucauuugauuaugagu
...............(((((....(((((((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))...........)))))))))..)))))

Structure

uuaacccauuuaaca     accc         -----------                              A 
               auuca    aucaaauga           aaugaguuauggguuagacccaacucAUUU A
               |||||    |||||||||           ||||||||||||||||||||||||||||||  
               ugagu    uaguuuacu           uuacUCAAUACCCAAUCUGGGUUGAGUAAA C
---------------     --au         caaauauuaau                              A 

Annotation confidence Low

Genome context

chr5: 20632514-20632637 [+]

Mature ath-miR405b-5p

• Accession: MIMAT0053838
• Description: Arabidopsis thaliana ath-miR405b-5p mature miRNA
• Sequence: 60 - AUUUAACAAAAUGAGUUGGGUC - 81
• Evidence: experimental ; unknown

Mature ath-miR405b-3p

• Accession: MIMAT0001007
• Description: Arabidopsis thaliana ath-miR405b-3p mature miRNA
• Sequence: 70 - AUGAGUUGGGUCUAACCCAUAACU - 93
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019