Stem-loop ath-MIR405d

Accession

MI0001077

Description

Arabidopsis thaliana ath-MIR405d precursor miRNA

Literature search

1 open access papers mention ath-MIR405d
(1 sentences)

Sequence

14923 reads, 110.0 reads per million, 183 experiments

acccaucaaaugAAAUGAGUUAUGGGUUGAcccaacucauuuuguuaaAUGAGUUGGGUCUAACCCAUAACUcauuuaaucauaaa
.........(((((((((((((((((((((((((((((((((....)))))))))))))).)))))))))))))))...))))...

Structure

acccaucaa    ---               -              u 
         augA   AAUGAGUUAUGGGUU GAcccaacucauuu g
         ||||   ||||||||||||||| ||||||||||||||  
         uacu   uuacUCAAUACCCAA CUGGGUUGAGUAaa u
------aaa    aau               U              u 

Annotation confidence Low

Genome context

chr4: 2789656-2789741 [-]

Mature ath-miR405d-5p

• Accession: MIMAT0053839
• Description: Arabidopsis thaliana ath-miR405d-5p mature miRNA
• Sequence: 13 - AAAUGAGUUAUGGGUUGA - 30
• Evidence: experimental ; unknown

Mature ath-miR405d-3p

• Accession: MIMAT0001008
• Description: Arabidopsis thaliana ath-miR405d-3p mature miRNA
• Sequence: 49 - AUGAGUUGGGUCUAACCCAUAACU - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019