Accession
MI0001078
Description
Arabidopsis thaliana
ath-MIR406 precursor miRNA
Literature search
1 open access papers mention ath-MIR406
(1 sentences)
(1 sentences)
Sequence
3197
reads,
24.0
reads per million, 168 experiments
uaaagucuuaauuuuuaguuaucacgauuuagcacauaucaaucuauagauuugauuuuucuuuuauuaguucuuAAAUUUUGAUUUGAGACAGUAACUauucaaaUAGAAUGCUAUUGUAAUCCAGaauccgaaagaaacgaaucaaaaaaaaaaaaaacgagucuucauaguaaaaaucgauuaacuaaaaaggaugg
....((((...((((((((((...((((((.............(((((((((((.(((((.((((.((.((((.....(((((((((((.((((((..(((((.....))))).))))))..))..)))).))))).....)))).)).)))).))))).)))))))..))))...))))))..))))))))))))))..
....((((...((((((((((...((((((.............(((((((((((.(((((.((((.((.((((.....(((((((((((.((((((..(((((.....))))).))))))..))..)))).))))).....)))).)).)))).))))).)))))))..))))...))))))..))))))))))))))..
Structure
uaaa uaa uca agcacauaucaau -- a c a a uuAAA - -- -G AC a
gucu uuuuuaguua cgauuu cuau agauuug uuuuu uuuu uu guuc UUUUG AUUU GA ACAGUA Uauuc a
|||| |||||||||| |||||| |||| ||||||| ||||| |||| || |||| ||||| |||| || |||||| ||||| a
uagg aaaaaucaau gcuaaa gaua ucugagc aaaaa aaaa aa uaag aaagc uaaG CU UGUUAU GUAAG U
--gg --- -ua ----------aau cu a a a c caaag c AC AA -C A
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
chr1: 19430078-19430277 [-]
Database links
Mature ath-miR406-5p
| Accession | MIMAT0053840 |
| Description | Arabidopsis thaliana ath-miR406-5p mature miRNA |
| Sequence | 76 - AAAUUUUGAUUUGAGACAGUAACU - 99 |
| Evidence |
experimental
unknown |
Mature ath-miR406-3p
| Accession | MIMAT0001009 |
| Description | Arabidopsis thaliana ath-miR406-3p mature miRNA |
| Sequence | 107 - UAGAAUGCUAUUGUAAUCCAG - 127 |
| Evidence |
experimental
cloned [1] |
References
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