Stem-loop ath-MIR407

Accession

MI0001079

Description

Arabidopsis thaliana ath-MIR407 precursor miRNA

Sequence

ugggaaaaauguuaaaaaaaucgccaacuuuuaaaaaugggacaaaaaaaucgccaacuccugaaaugucaUUUAAAUCAUAUACUUUUGGUugacuuuuccagaaagauaauaaagcaaagauucguaaucaacaaaacuuugcucuguuaucuuucuaaagaacucaaucaaaaguaugugauuaaaacgacauuucaggaguuggugauuuuucaucccauuuuucaaaguuggcaauuuuuuugacauuuuuuccaaug
(((((((((((((((((((((.(((((((((.((((((((((...(((((((((((((((((((((((((.(((.((((((((((((((((((((.((((..((((((((((((.(((((((.((.((.....)).)).))))))).))))))))))))..)))).)))))))))))))))))))).))).)))))))))))))))))))))))))..)))))))))).))))))))).)))))))))))))))))))))...

Structure

---                     c         u          caa                         a   A                    c    cc            a       a  c  a 
   ugggaaaaauguuaaaaaaau gccaacuuu aaaaauggga   aaaaaucgccaacuccugaaauguc UUU AAUCAUAUACUUUUGGUuga uuuu  agaaagauaaua agcaaag uu gu a
   ||||||||||||||||||||| ||||||||| ||||||||||   ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||  |||||||||||| ||||||| || || u
   accuuuuuuacaguuuuuuua cgguugaaa uuuuuacccu   uuuuuagugguugaggacuuuacag aaa uuaguguaugaaaacuaacu aaga  ucuuucuauugu ucguuuc aa ca c
gua                     a         c          -ac                         c   a                    c    aa            c       a  a  a 

Annotation confidence Not enough data

Comments

MIR407a and MIR407b published by Sunkar and Zhu [1] map to the same locus on NC_003071.3.

Genome context

chr2: 13866205-13866467 [+]

Mature ath-miR407

• Accession: MIMAT0001010
• Description: Arabidopsis thaliana ath-miR407 mature miRNA
• Sequence: 72 - UUUAAAUCAUAUACUUUUGGU - 92
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019