Dead hairpin entry

Stem-loop ath-MIR407

Accession

MI0001079

Description

Arabidopsis thaliana ath-MIR407 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Sequence

10560 reads, 83.0 reads per million, 177 experiments

ugggaaaaauguuaaaaaaaucgccaacuuuuaaaaaugggacaaaaaaaucgccaacuccugaaaugucaUUUAAAUCAUAUACUUUUGGUugacuuuuccagaaagauaauaaagcaaagauucguaaucaacaaaacuuugcucuguuaucuuucuAAAGAACUCAAUCAAAAGUAUGUGAuuaaaacgacauuucaggaguuggugauuuuucaucccauuuuucaaaguuggcaauuuuuuugacauuuuuuccaaug
(((((((((((((((((((((.(((((((((.((((((((((...(((((((((((((((((((((((((.(((.((((((((((((((((((((.((((..((((((((((((.(((((((.((.((.....)).)).))))))).))))))))))))..)))).)))))))))))))))))))).))).)))))))))))))))))))))))))..)))))))))).))))))))).)))))))))))))))))))))...

Structure

---                     c         u          caa                         a   A                    c    cc            a       a  c  a 
   ugggaaaaauguuaaaaaaau gccaacuuu aaaaauggga   aaaaaucgccaacuccugaaauguc UUU AAUCAUAUACUUUUGGUuga uuuu  agaaagauaaua agcaaag uu gu a
   ||||||||||||||||||||| ||||||||| ||||||||||   ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||  |||||||||||| ||||||| || || u
   accuuuuuuacaguuuuuuua cgguugaaa uuuuuacccu   uuuuuagugguugaggacuuuacag aaa uuAGUGUAUGAAAACUAACU AAGA  ucuuucuauugu ucguuuc aa ca c
gua                     a         c          -ac                         c   a                    C    AA            c       a  a  a