Stem-loop gga-mir-135a-2

Accession

MI0001169

Description

Gallus gallus gga-mir-135a-2 precursor miRNA

Literature search

8 open access papers mention gga-mir-135a-2
(10 sentences)

Sequence

355738 reads, 240.0 reads per million, 227 experiments

agauaaauucacucuaguguuuUAUGGCUUUUUAUUCCUAUGUGAuaguaauaaagucucAUGUAGGGAUGGAAGCCAUGAAauacauugugaaaaauca
.(((...(((((....((((((((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))))))))...)))))..))).

Structure

a   aaa     ucua                U            u g a 
 gau   uucac    guguuuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    |||||||||||||||| |||||||||||| | | u
 cua   aagug    cauaAAGUACCGAAGG UAGGGAUGUAcu u a a
a   -aa     -uua                -            c g a 

Annotation confidence High

Genome context

1: 46379936-46380035 [+]

Mature gga-miR-135a-5p

• Accession: MIMAT0001099
• Description: Gallus gallus gga-miR-135a-5p mature miRNA
• Sequence: 23 - UAUGGCUUUUUAUUCCUAUGUGA - 45
• Evidence: experimental ; Illumina [2]

Mature gga-miR-135a-2-3p

• Accession: MIMAT0026489
• Description: Gallus gallus gga-miR-135a-2-3p mature miRNA
• Sequence: 61 - AUGUAGGGAUGGAAGCCAUGAA - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45