Stem-loop gga-mir-99a

Accession

MI0001173

Description

Gallus gallus gga-mir-99a precursor miRNA

Literature search

8 open access papers mention gga-mir-99a
(19 sentences)

Sequence

180075 reads, 2158 reads per million, 5 experiments

ccaauuggcauaAACCCGUAGAUCCGAUCUUGUGuugaaaugcacugcaCAAGCUCGCUUCUAUGGGUCUgugucaguaug
...(((((((((.(((((((((..(((.(((((((...........))))))).)))..))))))))).)))))))))...

Structure

cca         A         UC   U       ugaa 
   auuggcaua ACCCGUAGA  CGA CUUGUGu    a
   ||||||||| |||||||||  ||| |||||||    u
   ugacugugU UGGGUAUCU  GCU GAACacg    g
gua         C         UC   C       ucac 

Annotation confidence High

Genome context

chr1: 99018041-99018121 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-99a

Mature gga-miR-99a-5p

• Accession: MIMAT0001103
• Description: Gallus gallus gga-miR-99a-5p mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAUCUUGUG - 34
• Evidence: experimental ; cloned [2]

Mature gga-miR-99a-3p

• Accession: MIMAT0006781
• Description: Gallus gallus gga-miR-99a-3p mature miRNA
• Sequence: 50 - CAAGCUCGCUUCUAUGGGUCU - 70
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40