Stem-loop gga-mir-153-1

Accession

MI0001188

Description

Gallus gallus gga-mir-153-1 precursor miRNA mir-153

Gene
family

RF00650; mir-153

Literature search

12 open access papers mention gga-mir-153-1
(111 sentences)

Sequence

407471 reads, 238.0 reads per million, 234 experiments

agcgguugccagugUCAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAUCauuggaaacugug
.((((((.(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).)))))).)))))).

Structure

a      g      -             GU       -a  aa 
 gcgguu ccagug UCAUUUUUGUGAU  UGCAGCU  gu  u
 |||||| |||||| |||||||||||||  |||||||  ||  a
 ugucaa gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g      a      U             AU       cc  ag 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

2: 8820452-8820538 [-]

Mature gga-miR-153-1-5p

• Accession: MIMAT0026502
• Description: Gallus gallus gga-miR-153-1-5p mature miRNA
• Sequence: 15 - UCAUUUUUGUGAUGUUGCAGCU - 36
• Evidence: experimental ; Illumina [2]

Mature gga-miR-153-1-3p

• Accession: MIMAT0001119
• Description: Gallus gallus gga-miR-153-1-3p mature miRNA
• Sequence: 53 - UUGCAUAGUCACAAAAGUGAUC - 74
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45