Stem-loop gga-mir-148a

Accession

MI0001189

Description

Gallus gallus gga-mir-148a precursor miRNA mir-148

Gene
family

RF00248; mir-148

Literature search

19 open access papers mention gga-mir-148a
(39 sentences)

Sequence

474632 reads, 8716 reads per million, 5 experiments

gaagcAAAGUUCUGUGACACUCAGACUcugguuacgauagcagUCAGUGCACUACAGAACUUUGUcuc
((.(((((((((((((.((((..(((((((.......))).))))))))...))))))))))))).))

Structure

  a             --A    CA    -   gu 
ga gcAAAGUUCUGUG   CACU  GACU cug  u
|| |||||||||||||   ||||  |||| |||  a
cu UGUUUCAAGACAU   GUGA  CUga gau  c
  c             CAC    --    c   ag 

Annotation confidence Medium

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr2: 32178254-32178321 [-]

Mature gga-miR-148a-3p

• Accession: MIMAT0001120
• Description: Gallus gallus gga-miR-148a-3p mature miRNA
• Sequence: 44 - UCAGUGCACUACAGAACUUUGU - 65
• Evidence: experimental ; Illumina [2]

Mature gga-miR-148a-5p

• Accession: MIMAT0026503
• Description: Gallus gallus gga-miR-148a-5p mature miRNA
• Sequence: 6 - AAAGUUCUGUGACACUCAGACU - 27
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45