Stem-loop gga-mir-216a

Accession

MI0001200

Description

Gallus gallus gga-mir-216a precursor miRNA

Literature search

3 open access papers mention gga-mir-216a
(5 sentences)

Sequence

446 reads, 17 reads per million, 5 experiments

gauggcugugaauuggcuUAAUCUCAGCUGGCAACUGUGagcaguuaauaauucucacagugguaucugggauuaugcuaaacacagcaauuucuuugcucuaaug
....((((((..(((((.(((((((((.((.((.(((((((.((((...))))))))))))).)).))))))))).))))).))))))..................

Structure

--------------gaug      aa     u         C  G  A       c    a 
                  gcugug  uuggc UAAUCUCAG UG CA CUGUGag aguu  
                  ||||||  ||||| ||||||||| || || ||||||| |||| a
                  cgacac  aaucg auuaggguc au gu gacacuc uuaa  
guaaucucguuucuuuaa      -a     u         u  g  -       -    u 

Annotation confidence Not enough data

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr3: 318076-318181 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-216a

Mature gga-miR-216a

• Accession: MIMAT0001131
• Description: Gallus gallus gga-miR-216a mature miRNA
• Sequence: 19 - UAAUCUCAGCUGGCAACUGUG - 39
• Evidence: not_experimental

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716