miRBase entry: gga-mir-216a

Stem-loop gga-mir-216a

Accession

MI0001200

Description

Gallus gallus gga-mir-216a precursor miRNA

Literature search

8 open access papers mention gga-mir-216a
(16 sentences)

Sequence

12532 reads, 28.0 reads per million, 152 experiments

gauggcugugaauuggcuUAAUCUCAGCUGGCAACUGUGAgcaguuaauaauucuCACAGUGGUAUCUGGGAUUAUGcuaaacacagcaauuucuuugcucuaaug
....((((((..(((((.(((((((((.((.((.(((((((.((((...))))))))))))).)).))))))))).))))).))))))..................

Structure

--------------gaug      aa     u         C  G  A       c    a 
                  gcugug  uuggc UAAUCUCAG UG CA CUGUGAg aguu  
                  ||||||  ||||| ||||||||| || || ||||||| |||| a
                  cgacac  aaucG AUUAGGGUC AU GU GACACuc uuaa  
guaaucucguuucuuuaa      -a     U         U  G  -       -    u

Annotation confidence High

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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

3: 406314-406419 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-216a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gga-miR-216a-5p

Accession	MIMAT0001131
Description	Gallus gallus gga-miR-216a-5p mature miRNA
Sequence	19 - UAAUCUCAGCUGGCAACUGUGA - 40
Evidence	not_experimental

Mature gga-miR-216a-3p

Accession	MIMAT0051205
Description	Gallus gallus gga-miR-216a-3p mature miRNA
Sequence	56 - CACAGUGGUAUCUGGGAUUAUG - 77
Evidence	not_experimental

References

PubMed ID: 15592404
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
"International Chicken Genome Sequencing Consortium"
"Nature (2004) 432:695-716