Stem-loop gga-mir-217

Accession

MI0001201

Description

Gallus gallus gga-mir-217 precursor miRNA mir-217

Gene
family

RF00673; mir-217

Literature search

7 open access papers mention gga-mir-217
(12 sentences)

Sequence

1462 reads, 53 reads per million, 5 experiments

aaagucacugcagaguucuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAUaauaaucagucaCCAUCAGUUCCUAAUGCAUUGCCuucagcaucuaaacaag
.(((..(((....))).)))(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).)))))........

Structure

aaagucacugcagaguucuu     c c  a  C     C          U -   aau 
                    gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
                    ||||| | || || ||||| |||||||||| | |||    
                    cuacg c uC GU ACGUA UCCUUGACUA C cug   a
------------gaacaaau     a u  C  U     A          C a   acu 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr3: 315408-315514 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-217

Mature gga-miR-217-5p

• Accession: MIMAT0001132
• Description: Gallus gallus gga-miR-217-5p mature miRNA
• Sequence: 32 - UACUGCAUCAGGAACUGAUUGGAU - 55
• Evidence: experimental ; Illumina [2]

Mature gga-miR-217-3p

• Accession: MIMAT0026513
• Description: Gallus gallus gga-miR-217-3p mature miRNA
• Sequence: 68 - CCAUCAGUUCCUAAUGCAUUGCC - 90
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45