Stem-loop gga-mir-194

Accession

MI0001202

Description

Gallus gallus gga-mir-194 precursor miRNA

Literature search

26 open access papers mention gga-mir-194
(140 sentences)

Sequence

235459 reads, 650.0 reads per million, 195 experiments

uggugcucucauaUGUAACAGCAACUCCAUGUGGAcuacacugacuuCCAGUGGAGAUGCUGUUACUUUugauag
.....((.(((...(((((((((.((((((.((((...........)))))))))).)))))))))...))).))

Structure

uggug  c   uaU         A      G    cuac 
     cu uca   GUAACAGCA CUCCAU UGGA    a
     || |||   ||||||||| |||||| ||||    c
     ga agu   CAUUGUCGU GAGGUG ACCu    u
-----  u   UUU         A      -    ucag 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

3: 18493694-18493768 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-194

Mature gga-miR-194-5p

• Accession: MIMAT0001133
• Description: Gallus gallus gga-miR-194-5p mature miRNA
• Sequence: 14 - UGUAACAGCAACUCCAUGUGGA - 35
• Evidence: not_experimental

Mature gga-miR-194-3p

• Accession: MIMAT0051206
• Description: Gallus gallus gga-miR-194-3p mature miRNA
• Sequence: 48 - CCAGUGGAGAUGCUGUUACUUU - 69
• Evidence: not_experimental

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716