Stem-loop gga-mir-215

Accession

MI0001203

Description

Gallus gallus gga-mir-215 precursor miRNA

Literature search

23 open access papers mention gga-mir-215
(41 sentences)

Sequence

5289775 reads, 15284.0 reads per million, 210 experiments

ucaguaagaacugguguccaggaaaaUGACCUAUGAAUUGACAGACUgcuuucaaaaugugCCUGUCAUUUCUAUAGGCCAAUauucugugcacuuuuccuacuu
..((((.(((..(((((.(((((...((.((((((((.((((((...((...........)))))))).))).))))).))...))))).))))).))).)))).

Structure

uc    a   cu     c     aaa  A     -   U      ACU  uuuc 
  agua gaa  ggugu cagga   UG CCUAU GAA UGACAG   gc    a
  |||| |||  ||||| |||||   || ||||| ||| ||||||   ||    a
  ucau cuu  ucacg gucuu   AC GGAUA CUU ACUGUC   Cg    a
-u    c   -u     u     aUA  C     U   U      ---  ugua 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

3: 18494000-18494104 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-215

Mature gga-miR-215-5p

• Accession: MIMAT0001134
• Description: Gallus gallus gga-miR-215-5p mature miRNA
• Sequence: 27 - UGACCUAUGAAUUGACAGACU - 47
• Evidence: experimental ; Illumina [2]

Mature gga-miR-215-3p

• Accession: MIMAT0026514
• Description: Gallus gallus gga-miR-215-3p mature miRNA
• Sequence: 62 - CCUGUCAUUUCUAUAGGCCAAU - 83
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45