Stem-loop gga-mir-218-1

Accession

MI0001212

Description

Gallus gallus gga-mir-218-1 precursor miRNA mir-218

Gene
family

RF00255; mir-218

Literature search

4 open access papers mention gga-mir-218-1
(38 sentences)

Sequence

17319 reads, 193 reads per million, 5 experiments

ugauaauguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugugagguaugaguaaaaCAUGGUUCUGUCAAGCACCAUGgaacgucacgcagcuuucuaca
..........(((.(((.((((((.(((((((((..((((((((.....(.(....).).....))))))))..))))))))).)))))).))).)))...........

Structure

-ugauaaugua   a   u      U         CU        gguug g g 
           gcg gau uucugU GUGCUUGAU  AACCAUGU     u a g
           ||| ||| |||||| |||||||||  ||||||||     | |  
           cgc cug aagGUA CACGAACUG  UUGGUACa     a u u
acaucuuucga   a   c      C         UC        aaaug g a 

Annotation confidence High

Genome context

chr4: 75581203-75581311 [-]

Mature gga-miR-218-5p

• Accession: MIMAT0001144
• Description: Gallus gallus gga-miR-218-5p mature miRNA
• Sequence: 24 - UUGUGCUUGAUCUAACCAUGU - 44
• Evidence: experimental ; Illumina [2]

Mature gga-miR-218-3p

• Accession: MIMAT0026518
• Description: Gallus gallus gga-miR-218-3p mature miRNA
• Sequence: 66 - CAUGGUUCUGUCAAGCACCAUG - 87
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45