Stem-loop gga-mir-128-1

Accession

MI0001217

Description

Gallus gallus gga-mir-128-1 precursor miRNA mir-128

Gene
family

RF00649; mir-128

Literature search

11 open access papers mention gga-mir-128-1
(45 sentences)

Sequence

21685625 reads, 10162.0 reads per million, 258 experiments

ugagcuguugaauuCGGGGCCGUAACACUGUCUGAGAgguuuauauuucUCACAGUGAACCGGUCUCUUUUucagcugcuuc
.((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).)))).

Structure

u    u      uuC       UAA      CU       u 
 gagc guugaa   GGGGCCG   CACUGU  GAGAggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuU   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       u 

Annotation confidence High

Genome context

7: 30233649-30233730 [+]

Mature gga-miR-128-1-5p

• Accession: MIMAT0031096
• Description: Gallus gallus gga-miR-128-1-5p mature miRNA
• Sequence: 15 - CGGGGCCGUAACACUGUCUGAGA - 37
• Evidence: experimental ; Illumina [3]

Mature gga-miR-128-3p

• Accession: MIMAT0001123
• Description: Gallus gallus gga-miR-128-3p mature miRNA
• Sequence: 50 - UCACAGUGAACCGGUCUCUUUU - 71
• Evidence: experimental ; cloned [2], Northern [2], Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45