Stem-loop gga-mir-204-2

Accession

MI0001225

Description

Gallus gallus gga-mir-204-2 precursor miRNA mir-204

Gene
family

RF00646; mir-204

Literature search

11 open access papers mention gga-mir-204-2
(22 sentences)

Sequence

138143 reads, 230.0 reads per million, 240 experiments

cuacugagacugugugaccugugggcUUCCCUUUGUCAUCCUAUGCCUggagaucacagugagGCAGGGACAGCAAAGGGAUGCUcagcugucgucucuuc
.....(((((.....(((...(((((.(((((((((..((((.(((((.............)))))))))..))))))))).)))))...))))))))...

Structure

cuacu     ugugu   cug     U         CA    A     ggaga 
     gagac     gac   ugggc UCCCUUUGU  UCCU UGCCU     u
     |||||     |||   ||||| |||||||||  |||| |||||     c
     cucug     cug   acUCG AGGGAAACG  AGGG ACGga     a
--cuu     -----   ucg     U         AC    -     gugac 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

10: 5710226-5710326 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-204-2

Mature gga-miR-204-5p

• Accession: MIMAT0001156
• Description: Gallus gallus gga-miR-204-5p mature miRNA
• Sequence: 27 - UUCCCUUUGUCAUCCUAUGCCU - 48
• Evidence: not_experimental

Mature gga-miR-204-2-3p

• Accession: MIMAT0051211
• Description: Gallus gallus gga-miR-204-2-3p mature miRNA
• Sequence: 64 - GCAGGGACAGCAAAGGGAUGCU - 85
• Evidence: not_experimental

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716