Stem-loop gga-mir-130b

Accession

MI0001239

Description

Gallus gallus gga-mir-130b precursor miRNA

Literature search

11 open access papers mention gga-mir-130b
(58 sentences)

Sequence

15132 reads, 187 reads per million, 5 experiments

gggcgggcugccCCUCUUUCCCUGUUGCACUACUgucacggucgcagcgagCAGUGCAAUAAUGAAAGGGCGUcagu
......((((.(.(((((((..(((((((((.((((..(....)..)).)).)))))))))..))))))).).))))

Structure

gggcgg    c C       CC         A  -  ca g 
      gcug c CUCUUUC  UGUUGCACU CU gu  c g
      |||| | |||||||  ||||||||| || ||  |  
      ugac G GGGAAAG  AUAACGUGA ga cg  g u
------    U C       UA         C  g  ac c 

Annotation confidence Medium

Genome context

chr15: 399151-399227 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-130b

Mature gga-miR-130b-3p

• Accession: MIMAT0001165
• Description: Gallus gallus gga-miR-130b-3p mature miRNA
• Sequence: 52 - CAGUGCAAUAAUGAAAGGGCGU - 73
• Evidence: experimental ; Illumina [2]

Mature gga-miR-130b-5p

• Accession: MIMAT0026530
• Description: Gallus gallus gga-miR-130b-5p mature miRNA
• Sequence: 13 - CCUCUUUCCCUGUUGCACUACU - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45