Stem-loop gga-mir-133a-2

Accession

MI0001248

Description

Gallus gallus gga-mir-133a-2 precursor miRNA

Literature search

29 open access papers mention gga-mir-133a-2
(124 sentences)

Sequence

108886519 reads, 46670.0 reads per million, 248 experiments

gugaggccaaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaacuguucaauggaUUUGGUCCCCUUCAACCAGCUGUagcugugcauugau
.........(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))...

Structure

gugaggcca     uuu    a       AA  U  A        aacug 
         aaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
         |||||   |||| |||||||  || || ||||||||      
         uuacg   cgaU UCGACCA  UU CC UGGUUUag     u
------uag     ugu    G       AC  C  C        guaac 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

20: 8478611-8478706 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-133a-2

Mature gga-miR-133a-5p

• Accession: MIMAT0026509
• Description: Gallus gallus gga-miR-133a-5p mature miRNA
• Sequence: 23 - AGCUGGUAAAAUGGAACCAAAU - 44
• Evidence: experimental ; Illumina [2]

Mature gga-miR-133a-3p

• Accession: MIMAT0001126
• Description: Gallus gallus gga-miR-133a-3p mature miRNA
• Sequence: 60 - UUUGGUCCCCUUCAACCAGCUGU - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45