Stem-loop gga-mir-100

Accession

MI0001258

Description

Gallus gallus gga-mir-100 precursor miRNA

Literature search

40 open access papers mention gga-mir-100
(152 sentences)

Sequence

40854511 reads, 21639.0 reads per million, 260 experiments

ccuguugccacaAACCCGUAGAUCCGAACUUGUGgucauauuccacaCAAGCUUGUAUCUAUAGGUAUGUGucugucugg
........((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).........

Structure

-ccuguugc    A   C      C   A      guca 
         caca ACC GUAGAU CGA CUUGUG    u
         |||| ||| |||||| ||| ||||||    a
         GUGU UGG UAUCUA GUU GAACac    u
ggucugucu    A   A      U   C      accu 

Annotation confidence High

Genome context

24: 3390461-3390540 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-100

Mature gga-miR-100-5p

• Accession: MIMAT0001178
• Description: Gallus gallus gga-miR-100-5p mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAACUUGUG - 34
• Evidence: experimental ; Illumina [2]

Mature gga-miR-100-3p

• Accession: MIMAT0026539
• Description: Gallus gallus gga-miR-100-3p mature miRNA
• Sequence: 48 - CAAGCUUGUAUCUAUAGGUAUGUG - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45