Stem-loop gga-mir-205a

Accession

MI0001267

Description

Gallus gallus gga-mir-205a precursor miRNA

Literature search

6 open access papers mention gga-mir-205a
(12 sentences)

Sequence

265279 reads, 252.0 reads per million, 189 experiments

gacaauccauggguucuguugUCCUUCAUUCCACCGGAGUCUGucucguaccuaaccaGAUUUCAGUGGAGUGAAGCACAagagacauggagauga
..((.((((((...(((.((((.(((((((((((.((((((((.............)))))))).))))))))))).)))).)))))))))..)).

Structure

ga  -a      ggu   g    C           C        ucucg 
  ca  uccaug   ucu uugU CUUCAUUCCAC GGAGUCUG     u
  ||  ||||||   ||| |||| ||||||||||| ||||||||     a
  gu  agguac   aga aACA GAAGUGAGGUG CUUUAGac     c
-a  ag      ---   g    C           A        caauc 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

26: 3112079-3112174 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-205a

Mature gga-miR-205a-5p

• Accession: MIMAT0001184
• Description: Gallus gallus gga-miR-205a-5p mature miRNA
• Sequence: 22 - UCCUUCAUUCCACCGGAGUCUG - 43
• Evidence: not_experimental

Mature gga-miR-205a-3p

• Accession: MIMAT0051214
• Description: Gallus gallus gga-miR-205a-3p mature miRNA
• Sequence: 59 - GAUUUCAGUGGAGUGAAGCACA - 80
• Evidence: not_experimental

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716