Stem-loop gga-mir-204-1

Accession

MI0001271

Description

Gallus gallus gga-mir-204-1 precursor miRNA mir-204

Gene
family

RF00646; mir-204

Literature search

11 open access papers mention gga-mir-204-1
(22 sentences)

Sequence

139879 reads, 241.0 reads per million, 229 experiments

gucaacagugucuguucaugugacccguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggggGCUGGGAAGGCAAAGGGACGUUcaacugucauc
...(((((...)))))...(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))))).

Structure

gucaacagugucuguucau     ccg     U          A     U    gagaau 
                   gugac   uggac UCCCUUUGUC UCCUA GCCU      a
                   |||||   ||||| |||||||||| ||||| ||||      u
                   uacug   acUUG AGGGAAACGG AGGGU CGgg      a
------------------c     uca     C          A     -    ggaagu 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

Z: 35793647-35793750 [-]

Mature gga-miR-204-5p

• Accession: MIMAT0001156
• Description: Gallus gallus gga-miR-204-5p mature miRNA
• Sequence: 33 - UUCCCUUUGUCAUCCUAUGCCU - 54
• Evidence: not_experimental

Mature gga-miR-204-1-3p

• Accession: MIMAT0051212
• Description: Gallus gallus gga-miR-204-1-3p mature miRNA
• Sequence: 72 - GCUGGGAAGGCAAAGGGACGUU - 93
• Evidence: not_experimental

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716