Stem-loop dre-mir-10a

Accession

MI0001363

Description

Danio rerio dre-mir-10a precursor miRNA

Literature search

18 open access papers mention dre-mir-10a
(191 sentences)

Sequence

23608 reads, 888 reads per million, 11 experiments

ugucugucaucuauauaUACCCUGUAGAUCCGAAUUUGUgugaauauacagucgCAAAUUCGUGUCUUGGGGAAUAuguaguugacauaaacacaacgc
(((.(((((.((((((((.(((((.((((.((((((((((............)))))))))).))))))))).)))))))).)))))...)))......

Structure

------   --c     u        A     U    C          ugaau 
      ugu   uguca cuauauaU CCCUG AGAU CGAAUUUGUg     a
      |||   ||||| |||||||| ||||| |||| ||||||||||      
      aca   acagu gauguAUA GGGGU UCUG GCUUAAACgc     u
cgcaac   aau     u        A     -    U          ugaca 

Annotation confidence Not enough data

Genome context

chr12: 27134869-27134967 [+]

Mature dre-miR-10a-5p

• Accession: MIMAT0001267
• Description: Danio rerio dre-miR-10a-5p mature miRNA
• Sequence: 18 - UACCCUGUAGAUCCGAAUUUGU - 39
• Evidence: experimental ; cloned [1-2]

Mature dre-miR-10a-3p

• Accession: MIMAT0003391
• Description: Danio rerio dre-miR-10a-3p mature miRNA
• Sequence: 55 - CAAAUUCGUGUCUUGGGGAAUA - 76
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293