Stem-loop dre-mir-10b-1

Accession

MI0001364

Description

Danio rerio dre-mir-10b-1 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

16 open access papers mention dre-mir-10b-1
(194 sentences)

Sequence

379020 reads, 23943 reads per million, 11 experiments

gucuauauaUACCCUGUAGAACCGAAUUUGUGugaaaaaauaacauucACAGAUUCGAUUCUAGGGGAGUauaugguc
..((((((((.((((.(((((.((((((((((...............)))))))))).))))))))).))))))))..

Structure

gu        A    G     C          ugaaaa 
  cuauauaU CCCU UAGAA CGAAUUUGUG      a
  |||||||| |||| ||||| ||||||||||      a
  gguauaUG GGGG AUCUU GCUUAGACAc      u
cu        A    -     A          uuacaa 

Annotation confidence High

Comments

The miR-10b sequence described in [1] is offset by 2 nt with respect to that cloned in mouse (MIR:MI0000221).

Genome context

chr9: 1952956-1953033 [-]

Mature dre-miR-10b-5p

• Accession: MIMAT0001268
• Description: Danio rerio dre-miR-10b-5p mature miRNA
• Sequence: 10 - UACCCUGUAGAACCGAAUUUGUG - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-10b-3p

• Accession: MIMAT0031919
• Description: Danio rerio dre-miR-10b-3p mature miRNA
• Sequence: 49 - ACAGAUUCGAUUCUAGGGGAGU - 70
• Evidence: not_experimental

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293


3. PubMed ID: 16736008
   The zebrafish hoxDb cluster has been reduced to a single microRNA
   "Woltering JM, Durston AJ"
   "Nat Genet (2006) 38:601-602