Stem-loop dre-mir-181b-1

Accession

MI0001366

Description

Danio rerio dre-mir-181b-1 precursor miRNA

Literature search

12 open access papers mention dre-mir-181b-1
(42 sentences)

Sequence

71877 reads, 4590 reads per million, 11 experiments

cauguacgcaccuucaguucuucaaaggucauaaucAACAUUCAUUGCUGUCGGUGGGuuuagucuuguaacagcucucugaacaaugaauguaacuguggcccagauu
..........................(((((((....((((((((((...((((.(((((..((......))))))).)))).))))))))))...)))))))......

Structure

cauguacgcaccuucaguucuucaaa       aucA          CUG    U     ua  cu 
                          ggucaua    ACAUUCAUUG   UCGG GGGuu  gu  u
                          |||||||    ||||||||||   |||| |||||  ||   
                          ccggugu    uguaaguaac   aguc cucga  ca  g
--------------------uuagac       -caa          --a    u     --  au 

Annotation confidence Low

Genome context

chr2: 45202223-45202331 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-181b-1

Mature dre-miR-181b-5p

• Accession: MIMAT0001270
• Description: Danio rerio dre-miR-181b-5p mature miRNA
• Sequence: 37 - AACAUUCAUUGCUGUCGGUGGG - 58
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293